3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAUUAAAUC*GCC*GUAAC*GG
Length
19 nucleotides
Bulged bases
7OSM|1|18S|A|359
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7OSM_001 not in the Motif Atlas
Homologous match to J4_8C3A_021
Geometric discrepancy: 0.0789
The information below is about J4_8C3A_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_78231.1
Basepair signature
cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
Number of instances in this motif group
2

Unit IDs

7OSM|1|18S|C|99
7OSM|1|18S|A|100
7OSM|1|18S|U|101
7OSM|1|18S|U|102
7OSM|1|18S|A|103
7OSM|1|18S|A|104
7OSM|1|18S|A|105
7OSM|1|18S|U|106
7OSM|1|18S|C|107
*
7OSM|1|18S|G|307
7OSM|1|18S|C|308
7OSM|1|18S|C|309
*
7OSM|1|18S|G|357
7OSM|1|18S|U|358
7OSM|1|18S|A|359
7OSM|1|18S|A|360
7OSM|1|18S|C|361
*
7OSM|1|18S|G|383
7OSM|1|18S|G|384

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS4
40S ribosomal protein S4
Chain eS8
40S ribosomal protein S8
Chain uS12
40S ribosomal protein S23
Chain uS17
40S ribosomal protein S11-B

Coloring options:


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