J4_7OSM_008
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7OSM|1|25S|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OSM_008 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1257
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
7OSM|1|25S|C|2192
7OSM|1|25S|U|2193
7OSM|1|25S|G|2194
*
7OSM|1|25S|C|2248
7OSM|1|25S|G|2249
*
7OSM|1|25S|C|2267
7OSM|1|25S|U|2268
7OSM|1|25S|U|2269
7OSM|1|25S|A|2270
7OSM|1|25S|A|2271
7OSM|1|25S|G|2272
7OSM|1|25S|G|2273
7OSM|1|25S|U|2274
7OSM|1|25S|A|2275
7OSM|1|25S|G|2276
*
7OSM|1|25S|U|2310
7OSM|1|25S|G|2311
7OSM|1|25S|A|2312
7OSM|1|25S|A|2313
7OSM|1|25S|U|2314
7OSM|1|25S|G|2315
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain 18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain PSIT
- Transfer RNA; tRNA
- Chain eL41
- eL41
- Chain uL2
- 60S ribosomal protein L2-B
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