J4_7OSM_013

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

7OSM|1|PSIT|U|8, 7OSM|1|PSIT|U|48, 7OSM|1|PSIT|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OSM_013 not in the Motif Atlas

Homologous match to J4_1QU2_001

Geometric discrepancy: 0.2971

The information below is about J4_1QU2_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7OSM|1|PSIT|G|7
7OSM|1|PSIT|U|8
7OSM|1|PSIT|G|9
7OSM|1|PSIT|G|10
*
7OSM|1|PSIT|C|26
7OSM|1|PSIT|G|27
7OSM|1|PSIT|U|28
*
7OSM|1|PSIT|A|44
7OSM|1|PSIT|A|45
7OSM|1|PSIT|G|46
7OSM|1|PSIT|G|47
7OSM|1|PSIT|U|48
7OSM|1|PSIT|C|49
7OSM|1|PSIT|G|50
*
7OSM|1|PSIT|C|66
7OSM|1|PSIT|C|67

Current chains

Chain PSIT

FMET tRNA

Nearby chains

Chain eL42

BJ4_G0001880.mRNA.1.CDS.1