J4_7OT5_001

3D structure

PDB id

7OT5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7OT5|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OT5_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1199

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7OT5|1|1|C|268
7OT5|1|1|C|269
*
7OT5|1|1|G|370
7OT5|1|1|A|371
7OT5|1|1|G|372
7OT5|1|1|U|373
7OT5|1|1|A|374
7OT5|1|1|G|375
*
7OT5|1|1|U|399
7OT5|1|1|G|400
7OT5|1|1|A|401
7OT5|1|1|A|402
7OT5|1|1|U|403
7OT5|1|1|A|404
7OT5|1|1|U|405
7OT5|1|1|G|406
*
7OT5|1|1|C|421
7OT5|1|1|A|422
7OT5|1|1|A|423
7OT5|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain W

50S ribosomal protein L28