J4_7OTC_001

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7OTC|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OTC_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1142

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7OTC|1|A|C|268
7OTC|1|A|C|269
*
7OTC|1|A|G|370
7OTC|1|A|A|371
7OTC|1|A|G|372
7OTC|1|A|U|373
7OTC|1|A|A|374
7OTC|1|A|G|375
*
7OTC|1|A|U|399
7OTC|1|A|G|400
7OTC|1|A|A|401
7OTC|1|A|A|402
7OTC|1|A|U|403
7OTC|1|A|A|404
7OTC|1|A|U|405
7OTC|1|A|G|406
*
7OTC|1|A|C|421
7OTC|1|A|A|422
7OTC|1|A|A|423
7OTC|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28