J4_7OTC_012

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7OTC|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OTC_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2836

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7OTC|1|a|G|115
7OTC|1|a|A|116
7OTC|1|a|G|117
7OTC|1|a|U|118
7OTC|1|a|A|119
7OTC|1|a|A|120
7OTC|1|a|U|121
7OTC|1|a|G|122
*
7OTC|1|a|U|239
7OTC|1|a|G|240
*
7OTC|1|a|C|286
7OTC|1|a|U|287
7OTC|1|a|A|288
7OTC|1|a|G|289
*
7OTC|1|a|C|311
7OTC|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17