J4_7OTC_013

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7OTC|1|a|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OTC_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0815

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7OTC|1|a|G|142
7OTC|1|a|A|143
7OTC|1|a|G|144
*
7OTC|1|a|C|178
7OTC|1|a|A|179
7OTC|1|a|U|180
7OTC|1|a|A|181
7OTC|1|a|A|182
7OTC|1|a|C|183
7OTC|1|a|G|184
*
7OTC|1|a|C|193
7OTC|1|a|C|194
7OTC|1|a|A|195
7OTC|1|a|A|196
7OTC|1|a|A|197
7OTC|1|a|G|198
*
7OTC|1|a|U|219
7OTC|1|a|G|220
7OTC|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20