J4_7OYD_002
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CC*GAGGGAG*UGCCGCCG*CACGGGG
- Length
- 24 nucleotides
- Bulged bases
- 7OYD|1|5|G|962, 7OYD|1|5|C|1284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OYD|1|5|C|712
7OYD|1|5|C|713
*
7OYD|1|5|G|958
7OYD|1|5|A|959
7OYD|1|5|G|960
7OYD|1|5|G|961
7OYD|1|5|G|962
7OYD|1|5|A|963
7OYD|1|5|G|964
*
7OYD|1|5|U|974
7OYD|1|5|G|975
7OYD|1|5|C|976
7OYD|1|5|C|977
7OYD|1|5|G|978
7OYD|1|5|C|979
7OYD|1|5|C|980
7OYD|1|5|G|981
*
7OYD|1|5|C|1282
7OYD|1|5|A|1283
7OYD|1|5|C|1284
7OYD|1|5|G|1285
7OYD|1|5|G|1286
7OYD|1|5|G|1287
7OYD|1|5|G|1288
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- 60S ribosomal protein L6
- Chain F
- uL30
- Chain e
- eL32
Coloring options: