J4_7OYD_003

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7OYD|1|5|A|2370, 7OYD|1|5|U|2373, 7OYD|1|5|U|2832

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|OMC|2369
7OYD|1|5|A|2370
7OYD|1|5|A|2371
7OYD|1|5|A|2372
7OYD|1|5|U|2373
7OYD|1|5|A|2374
7OYD|1|5|U|2375
*
7OYD|1|5|A|2393
7OYD|1|5|G|2394
7OYD|1|5|G|2395
*
7OYD|1|5|C|2828
7OYD|1|5|A|2829
7OYD|1|5|U|2830
7OYD|1|5|G|2831
7OYD|1|5|U|2832
7OYD|1|5|U|2833
*
7OYD|1|5|A|3860
7OYD|1|5|G|3861

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19

Chain d

eL31