J4_7OYD_005

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

7OYD|1|5|A|2700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|G|2622
7OYD|1|5|G|2623
*
7OYD|1|5|U|2641
7OYD|1|5|G|2642
7OYD|1|5|U|2643
7OYD|1|5|G|2644
7OYD|1|5|A|2645
7OYD|1|5|A|2646
*
7OYD|1|5|U|2696
7OYD|1|5|G|2697
7OYD|1|5|G|2698
7OYD|1|5|A|2699
7OYD|1|5|A|2700
7OYD|1|5|A|2701
7OYD|1|5|G|2702
*
7OYD|1|5|U|2722
7OYD|1|5|C|2723

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain U

RPL22

Chain g

60S ribosomal protein L34

Chain k

eL38