J4_7OYD_007
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7OYD|1|5|U|3777, 7OYD|1|5|U|3822
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OYD_007 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.2475
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
7OYD|1|5|C|3700
7OYD|1|5|U|3701
7OYD|1|5|G|3702
*
7OYD|1|5|C|3756
7OYD|1|5|G|3757
*
7OYD|1|5|C|3775
7OYD|1|5|U|3776
7OYD|1|5|U|3777
7OYD|1|5|A|3778
7OYD|1|5|A|3779
7OYD|1|5|G|3780
7OYD|1|5|G|3781
7OYD|1|5|U|3782
7OYD|1|5|A|3783
7OYD|1|5|G|3784
*
7OYD|1|5|U|3818
7OYD|1|5|G|3819
7OYD|1|5|A|3820
7OYD|1|5|A|3821
7OYD|1|5|U|3822
7OYD|1|5|G|3823
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Ribosomal protein L8
- Chain n
- 60s ribosomal protein l41
- Chain t
- Eukaryotic translation initiation factor 5A-1
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