J4_7OYD_011
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 7OYD|1|9|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OYD_011 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.1525
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7OYD|1|9|C|98
7OYD|1|9|A|99
7OYD|1|9|U|100
7OYD|1|9|U|101
7OYD|1|9|A|102
7OYD|1|9|A|103
7OYD|1|9|A|104
7OYD|1|9|U|105
7OYD|1|9|C|106
*
7OYD|1|9|G|355
7OYD|1|9|C|356
7OYD|1|9|C|357
*
7OYD|1|9|G|405
7OYD|1|9|U|406
7OYD|1|9|G|407
7OYD|1|9|A|408
7OYD|1|9|C|409
*
7OYD|1|9|G|431
7OYD|1|9|G|432
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain II
- 40S ribosomal protein S8
- Chain LL
- 40S ribosomal protein S11
- Chain XX
- RPS23
Coloring options: