J4_7P3K_002

3D structure

PDB id

7P3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7P3K|1|A|C|183, 7P3K|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7P3K_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1065

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7P3K|1|A|G|142
7P3K|1|A|A|143
7P3K|1|A|G|144
*
7P3K|1|A|C|178
7P3K|1|A|A|179
7P3K|1|A|U|180
7P3K|1|A|A|181
7P3K|1|A|A|182
7P3K|1|A|C|183
7P3K|1|A|G|184
*
7P3K|1|A|C|193
7P3K|1|A|C|194
7P3K|1|A|A|195
7P3K|1|A|A|196
7P3K|1|A|A|197
7P3K|1|A|G|198
*
7P3K|1|A|U|219
7P3K|1|A|G|220
7P3K|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20