J4_7P48_011

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7P48_011 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1952

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7P48|1|A|G|2670
7P48|1|A|A|2671
7P48|1|A|G|2672
7P48|1|A|C|2673
*
7P48|1|A|G|2701
7P48|1|A|A|2702
7P48|1|A|C|2703
*
7P48|1|A|G|2758
7P48|1|A|G|2759
7P48|1|A|A|2760
7P48|1|A|C|2761
7P48|1|A|G|2762
*
7P48|1|A|C|2796
7P48|1|A|C|2797
7P48|1|A|C|2798

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain H

50S ribosomal protein L13

Chain I

50S ribosomal protein L14