J4_7P7R_002

3D structure

PDB id

7P7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAG*CGCU*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7P7R_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0853

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7P7R|1|A|U|333
7P7R|1|A|G|334
7P7R|1|A|A|335
7P7R|1|A|A|336
7P7R|1|A|G|337
*
7P7R|1|A|C|352
7P7R|1|A|G|353
7P7R|1|A|C|354
7P7R|1|A|U|355
*
7P7R|1|A|G|359
7P7R|1|A|A|360
7P7R|1|A|G|361
*
7P7R|1|A|C|373
7P7R|1|A|G|374
7P7R|1|A|U|375
7P7R|1|A|A|376
7P7R|1|A|G|377

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain X

50S ribosomal protein L24