J4_7PHC_005

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CC*GA*UCGAG*CGAAGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PHC_005 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.31

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7PHC|1|3|C|1472
7PHC|1|3|C|1473
*
7PHC|1|3|G|1492
7PHC|1|3|A|1493
*
7PHC|1|3|U|1551
7PHC|1|3|C|1552
7PHC|1|3|G|1553
7PHC|1|3|A|1554
7PHC|1|3|G|1555
*
7PHC|1|3|C|1575
7PHC|1|3|G|1576
7PHC|1|3|A|1577
7PHC|1|3|A|1578
7PHC|1|3|G|1579
7PHC|1|3|G|1580

Current chains

Chain 3

23S ribosomal RNA

Nearby chains