J4_7PHC_006

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GACUG*CACAA*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PHC_006 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.2067

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7PHC|1|3|G|1779
7PHC|1|3|A|1780
7PHC|1|3|C|1781
7PHC|1|3|U|1782
7PHC|1|3|G|1783
*
7PHC|1|3|C|1795
7PHC|1|3|A|1796
7PHC|1|3|C|1797
7PHC|1|3|A|1798
7PHC|1|3|A|1799
*
7PHC|1|3|U|1834
7PHC|1|3|G|1835
7PHC|1|3|A|1836
7PHC|1|3|C|1837
*
7PHC|1|3|G|1982
7PHC|1|3|U|1983
7PHC|1|3|A|1984
7PHC|1|3|A|1985
7PHC|1|3|C|1986

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2