Loop J4_7PIA

3D structure

PDB id: 7PIA (explore in PDB, NAKB, or RNA 3D Hub)
Description: 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
Experimental method: ELECTRON MICROSCOPY
Resolution: 13.6 Å

Loop

Sequence: GCACAAGUGGUGGA*UAC*GGAAUCACUAGUAAUC*GGUGAAUACGUUCUC
Length: 48 nucleotides
Bulged bases: None detected
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7PIA|1|5|G|928
7PIA|1|5|C|929
7PIA|1|5|A|930
7PIA|1|5|C|931
7PIA|1|5|A|932
7PIA|1|5|A|933
7PIA|1|5|G|934
7PIA|1|5|U|935
7PIA|1|5|G|936
7PIA|1|5|G|937
7PIA|1|5|U|938
7PIA|1|5|G|939
7PIA|1|5|G|940
7PIA|1|5|A|941
*
7PIA|1|5|U|1210
7PIA|1|5|A|1211
7PIA|1|5|C|1212
*
7PIA|1|5|G|1311
7PIA|1|5|G|1312
7PIA|1|5|A|1313
7PIA|1|5|A|1314
7PIA|1|5|U|1315
7PIA|1|5|C|1316
7PIA|1|5|A|1317
7PIA|1|5|C|1318
7PIA|1|5|U|1319
7PIA|1|5|A|1320
7PIA|1|5|G|1321
7PIA|1|5|U|1322
7PIA|1|5|A|1323
7PIA|1|5|A|1324
7PIA|1|5|U|1325
7PIA|1|5|C|1326
*
7PIA|1|5|G|1345
7PIA|1|5|G|1346
7PIA|1|5|U|1347
7PIA|1|5|G|1348
7PIA|1|5|A|1349
7PIA|1|5|A|1350
7PIA|1|5|U|1351
7PIA|1|5|A|1352
7PIA|1|5|C|1353
7PIA|1|5|G|1354
7PIA|1|5|U|1355
7PIA|1|5|U|1356
7PIA|1|5|C|1357
7PIA|1|5|U|1358
7PIA|1|5|C|1359

Current chains

Chain 5: 16S ribosomal RNA

Nearby chains

Chain 8: Transfer RNA; tRNA
Chain F: 30S ribosomal protein S7
Chain H: 30S ribosomal protein S9
Chain I: 30S ribosomal protein S10
Chain L: 30S ribosomal protein S13

J4_7PIA_011