J4_7PIA_017

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GACUG*CACAA*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PIA_017 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.28

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7PIA|1|3|G|1779
7PIA|1|3|A|1780
7PIA|1|3|C|1781
7PIA|1|3|U|1782
7PIA|1|3|G|1783
*
7PIA|1|3|C|1795
7PIA|1|3|A|1796
7PIA|1|3|C|1797
7PIA|1|3|A|1798
7PIA|1|3|A|1799
*
7PIA|1|3|U|1834
7PIA|1|3|G|1835
7PIA|1|3|A|1836
7PIA|1|3|C|1837
*
7PIA|1|3|G|1982
7PIA|1|3|U|1983
7PIA|1|3|A|1984
7PIA|1|3|A|1985
7PIA|1|3|C|1986

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2