J4_7PIB_013
3D structure
- PDB id
- 7PIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUAG*CAA*UGUGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7PIB|1|7|U|9, 7PIB|1|7|U|48, 7PIB|1|7|C|49
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7PIB_013 not in the Motif Atlas
- Homologous match to J4_8VU0_001
- Geometric discrepancy: 0.2862
- The information below is about J4_8VU0_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
7PIB|1|7|G|8
7PIB|1|7|U|9
7PIB|1|7|A|10
7PIB|1|7|G|11
*
7PIB|1|7|C|26
7PIB|1|7|A|27
7PIB|1|7|A|28
*
7PIB|1|7|U|44
7PIB|1|7|G|45
7PIB|1|7|U|46
7PIB|1|7|G|47
7PIB|1|7|U|48
7PIB|1|7|C|49
7PIB|1|7|G|50
*
7PIB|1|7|C|66
7PIB|1|7|C|67
Current chains
- Chain 7
- tRNA-Phe
Nearby chains
- Chain 3
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- Small subunit ribosomal RNA; SSU rRNA
- Chain 9
- Elongation factor G
- Chain R
- 30S ribosomal protein S19
- Chain l
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L27
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