J4_7PIB_014

3D structure

PDB id

7PIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAG*CAA*UGUGUCG*CC

Length

16 nucleotides

Bulged bases

7PIB|1|8|U|9, 7PIB|1|8|U|48, 7PIB|1|8|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PIB_014 not in the Motif Atlas

Homologous match to J4_8VU0_001

Geometric discrepancy: 0.2863

The information below is about J4_8VU0_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

7PIB|1|8|G|8
7PIB|1|8|U|9
7PIB|1|8|A|10
7PIB|1|8|G|11
*
7PIB|1|8|C|26
7PIB|1|8|A|27
7PIB|1|8|A|28
*
7PIB|1|8|U|44
7PIB|1|8|G|45
7PIB|1|8|U|46
7PIB|1|8|G|47
7PIB|1|8|U|48
7PIB|1|8|C|49
7PIB|1|8|G|50
*
7PIB|1|8|C|66
7PIB|1|8|C|67

Current chains

Chain 8

tRNA-Phe

Nearby chains

Chain 5

Small subunit ribosomal RNA; SSU rRNA

Chain L

30S ribosomal protein S13

Chain z

50S ribosomal protein L33 1