J4_7PIR_007

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7PIR|1|3|U|1978

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PIR_007 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.261

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7PIR|1|3|C|1840
7PIR|1|3|U|1841
7PIR|1|3|G|1842
*
7PIR|1|3|C|1912
7PIR|1|3|G|1913
*
7PIR|1|3|C|1931
7PIR|1|3|C|1932
7PIR|1|3|U|1933
7PIR|1|3|A|1934
7PIR|1|3|A|1935
7PIR|1|3|G|1936
7PIR|1|3|G|1937
7PIR|1|3|U|1938
7PIR|1|3|A|1939
7PIR|1|3|G|1940
*
7PIR|1|3|U|1974
7PIR|1|3|G|1975
7PIR|1|3|A|1976
7PIR|1|3|A|1977
7PIR|1|3|U|1978
7PIR|1|3|G|1979

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 5

Small subunit ribosomal RNA; SSU rRNA

Chain 8

Transfer RNA; tRNA

Chain a

50S ribosomal protein L2