J4_7PIR_015

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUAG*CAACG*CGUGUGUCG*CC

Length

20 nucleotides

Bulged bases

7PIR|1|8|U|9, 7PIR|1|8|U|48, 7PIR|1|8|C|49

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PIR|1|8|G|8
7PIR|1|8|U|9
7PIR|1|8|A|10
7PIR|1|8|G|11
*
7PIR|1|8|C|26
7PIR|1|8|A|27
7PIR|1|8|A|28
7PIR|1|8|C|29
7PIR|1|8|G|30
*
7PIR|1|8|C|42
7PIR|1|8|G|43
7PIR|1|8|U|44
7PIR|1|8|G|45
7PIR|1|8|U|46
7PIR|1|8|G|47
7PIR|1|8|U|48
7PIR|1|8|C|49
7PIR|1|8|G|50
*
7PIR|1|8|C|66
7PIR|1|8|C|67

Current chains

Chain 8

tRNA-Phe

Nearby chains

Chain 5

Small subunit ribosomal RNA; SSU rRNA

Chain L

30S ribosomal protein S13