J4_7PJS_001

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7PJS|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJS_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1229

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7PJS|1|A|C|268
7PJS|1|A|C|269
*
7PJS|1|A|G|370
7PJS|1|A|A|371
7PJS|1|A|G|372
7PJS|1|A|U|373
7PJS|1|A|A|374
7PJS|1|A|G|375
*
7PJS|1|A|U|399
7PJS|1|A|G|400
7PJS|1|A|A|401
7PJS|1|A|A|402
7PJS|1|A|U|403
7PJS|1|A|A|404
7PJS|1|A|U|405
7PJS|1|A|G|406
*
7PJS|1|A|C|421
7PJS|1|A|A|422
7PJS|1|A|A|423
7PJS|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28