J4_7PJS_010

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJS_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0637

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7PJS|1|A|G|2643
7PJS|1|A|G|2644
7PJS|1|A|G|2645
7PJS|1|A|C|2646
*
7PJS|1|A|G|2674
7PJS|1|A|A|2675
7PJS|1|A|C|2676
*
7PJS|1|A|G|2731
7PJS|1|A|G|2732
7PJS|1|A|A|2733
7PJS|1|A|A|2734
7PJS|1|A|G|2735
*
7PJS|1|A|U|2769
7PJS|1|A|G|2770
7PJS|1|A|C|2771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14