J4_7PJS_011

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7PJS|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJS_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2868

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7PJS|1|a|G|115
7PJS|1|a|A|116
7PJS|1|a|G|117
7PJS|1|a|U|118
7PJS|1|a|A|119
7PJS|1|a|A|120
7PJS|1|a|U|121
7PJS|1|a|G|122
*
7PJS|1|a|U|239
7PJS|1|a|G|240
*
7PJS|1|a|C|286
7PJS|1|a|U|287
7PJS|1|a|A|288
7PJS|1|a|G|289
*
7PJS|1|a|C|311
7PJS|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains