J4_7PJT_004

3D structure

PDB id

7PJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7PJT|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJT_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.2084

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7PJT|1|A|G|1310
7PJT|1|A|G|1311
7PJT|1|A|U|1312
7PJT|1|A|U|1313
7PJT|1|A|C|1314
*
7PJT|1|A|G|1338
7PJT|1|A|G|1339
7PJT|1|A|U|1340
7PJT|1|A|G|1341
7PJT|1|A|A|1342
7PJT|1|A|G|1343
*
7PJT|1|A|C|1404
7PJT|1|A|U|1405
*
7PJT|1|A|A|1597
7PJT|1|A|A|1598
7PJT|1|A|U|1599
7PJT|1|A|C|1600
7PJT|1|A|G|1601
7PJT|1|A|U|1602
7PJT|1|A|A|1603
7PJT|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23