J4_7PJT_006

3D structure

PDB id

7PJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJT_006 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.151

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7PJT|1|A|A|1772
7PJT|1|A|A|1773
7PJT|1|A|C|1774
7PJT|1|A|U|1775
7PJT|1|A|G|1776
*
7PJT|1|A|C|1788
7PJT|1|A|A|1789
7PJT|1|A|C|1790
7PJT|1|A|A|1791
7PJT|1|A|G|1792
*
7PJT|1|A|U|1827
7PJT|1|A|G|1828
7PJT|1|A|A|1829
7PJT|1|A|C|1830
*
7PJT|1|A|G|1975
7PJT|1|A|U|1976
7PJT|1|A|A|1977
7PJT|1|A|A|1978
7PJT|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2