J4_7PJU_001

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7PJU|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJU_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1402

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7PJU|1|A|C|268
7PJU|1|A|C|269
*
7PJU|1|A|G|370
7PJU|1|A|A|371
7PJU|1|A|G|372
7PJU|1|A|U|373
7PJU|1|A|A|374
7PJU|1|A|G|375
*
7PJU|1|A|U|399
7PJU|1|A|G|400
7PJU|1|A|A|401
7PJU|1|A|A|402
7PJU|1|A|U|403
7PJU|1|A|A|404
7PJU|1|A|U|405
7PJU|1|A|G|406
*
7PJU|1|A|C|421
7PJU|1|A|A|422
7PJU|1|A|A|423
7PJU|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28