J4_7PJU_010

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJU_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0916

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7PJU|1|A|G|2643
7PJU|1|A|G|2644
7PJU|1|A|G|2645
7PJU|1|A|C|2646
*
7PJU|1|A|G|2674
7PJU|1|A|A|2675
7PJU|1|A|C|2676
*
7PJU|1|A|G|2731
7PJU|1|A|G|2732
7PJU|1|A|A|2733
7PJU|1|A|A|2734
7PJU|1|A|G|2735
*
7PJU|1|A|U|2769
7PJU|1|A|G|2770
7PJU|1|A|C|2771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14