J4_7PJU_011

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7PJU|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJU_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2705

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7PJU|1|a|G|115
7PJU|1|a|A|116
7PJU|1|a|G|117
7PJU|1|a|U|118
7PJU|1|a|A|119
7PJU|1|a|A|120
7PJU|1|a|U|121
7PJU|1|a|G|122
*
7PJU|1|a|U|239
7PJU|1|a|G|240
*
7PJU|1|a|C|286
7PJU|1|a|U|287
7PJU|1|a|A|288
7PJU|1|a|G|289
*
7PJU|1|a|C|311
7PJU|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17