J4_7PJV_001

3D structure

PDB id

7PJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7PJV|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJV_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1498

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7PJV|1|A|C|268
7PJV|1|A|C|269
*
7PJV|1|A|G|370
7PJV|1|A|A|371
7PJV|1|A|G|372
7PJV|1|A|U|373
7PJV|1|A|A|374
7PJV|1|A|G|375
*
7PJV|1|A|U|399
7PJV|1|A|G|400
7PJV|1|A|A|401
7PJV|1|A|A|402
7PJV|1|A|U|403
7PJV|1|A|A|404
7PJV|1|A|U|405
7PJV|1|A|G|406
*
7PJV|1|A|C|421
7PJV|1|A|A|422
7PJV|1|A|A|423
7PJV|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28