J4_7PJV_005

3D structure

PDB id

7PJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7PJV|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJV_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0845

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7PJV|1|A|U|1313
7PJV|1|A|C|1314
*
7PJV|1|A|G|1338
7PJV|1|A|G|1339
7PJV|1|A|U|1340
7PJV|1|A|G|1341
7PJV|1|A|A|1342
7PJV|1|A|G|1343
*
7PJV|1|A|C|1404
7PJV|1|A|U|1405
*
7PJV|1|A|A|1597
7PJV|1|A|A|1598
7PJV|1|A|U|1599
7PJV|1|A|C|1600
7PJV|1|A|G|1601
7PJV|1|A|U|1602
7PJV|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23