J4_7PJV_010

3D structure

PDB id

7PJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJV_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0892

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7PJV|1|A|G|2643
7PJV|1|A|G|2644
7PJV|1|A|G|2645
7PJV|1|A|C|2646
*
7PJV|1|A|G|2674
7PJV|1|A|A|2675
7PJV|1|A|C|2676
*
7PJV|1|A|G|2731
7PJV|1|A|G|2732
7PJV|1|A|A|2733
7PJV|1|A|A|2734
7PJV|1|A|G|2735
*
7PJV|1|A|U|2769
7PJV|1|A|G|2770
7PJV|1|A|C|2771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14