J4_7PJW_001

3D structure

PDB id

7PJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7PJW|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJW_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2012

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7PJW|1|A|C|268
7PJW|1|A|C|269
*
7PJW|1|A|G|370
7PJW|1|A|A|371
7PJW|1|A|G|372
7PJW|1|A|U|373
7PJW|1|A|A|374
7PJW|1|A|G|375
*
7PJW|1|A|U|399
7PJW|1|A|G|400
7PJW|1|A|A|401
7PJW|1|A|A|402
7PJW|1|A|U|403
7PJW|1|A|A|404
7PJW|1|A|U|405
7PJW|1|A|G|406
*
7PJW|1|A|C|421
7PJW|1|A|A|422
7PJW|1|A|A|423
7PJW|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28