J4_7PJX_001

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7PJX|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJX_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1498

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7PJX|1|A|C|268
7PJX|1|A|C|269
*
7PJX|1|A|G|370
7PJX|1|A|A|371
7PJX|1|A|G|372
7PJX|1|A|U|373
7PJX|1|A|A|374
7PJX|1|A|G|375
*
7PJX|1|A|U|399
7PJX|1|A|G|400
7PJX|1|A|A|401
7PJX|1|A|A|402
7PJX|1|A|U|403
7PJX|1|A|A|404
7PJX|1|A|U|405
7PJX|1|A|G|406
*
7PJX|1|A|C|421
7PJX|1|A|A|422
7PJX|1|A|A|423
7PJX|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28