J4_7PJX_003

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

7PJX|1|A|G|1271, 7PJX|1|A|A|1272, 7PJX|1|A|U|1273, 7PJX|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJX_003 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0841

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7PJX|1|A|C|1270
7PJX|1|A|G|1271
7PJX|1|A|A|1272
7PJX|1|A|U|1273
7PJX|1|A|A|1274
7PJX|1|A|A|1275
7PJX|1|A|A|1276
*
7PJX|1|A|U|1294
7PJX|1|A|C|1295
*
7PJX|1|A|G|1645
7PJX|1|A|C|1646
7PJX|1|A|U|1647
7PJX|1|A|U|1648
*
7PJX|1|A|A|2009
7PJX|1|A|G|2010

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22