J4_7PJZ_014
3D structure
- PDB id
- 7PJZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7PJZ|1|v|4SU|8, 7PJZ|1|v|U|47, 7PJZ|1|v|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7PJZ_014 not in the Motif Atlas
- Homologous match to J4_1QU2_001
- Geometric discrepancy: 0.2528
- The information below is about J4_1QU2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
7PJZ|1|v|G|7
7PJZ|1|v|4SU|8
7PJZ|1|v|G|9
7PJZ|1|v|G|10
*
7PJZ|1|v|C|25
7PJZ|1|v|G|26
7PJZ|1|v|U|27
*
7PJZ|1|v|A|43
7PJZ|1|v|A|44
7PJZ|1|v|G|45
7PJZ|1|v|A|46
7PJZ|1|v|U|47
7PJZ|1|v|C|48
7PJZ|1|v|G|49
*
7PJZ|1|v|C|65
7PJZ|1|v|C|66
Current chains
- Chain v
- P-site tRNA(fMet)
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: