J4_7PWO_004
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GACUG*CACAG*UGAUU*ACCAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7PWO_004 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0865
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7PWO|1|1|G|1618
7PWO|1|1|A|1619
7PWO|1|1|C|1620
7PWO|1|1|U|1621
7PWO|1|1|G|1622
*
7PWO|1|1|C|1634
7PWO|1|1|A|1635
7PWO|1|1|C|1636
7PWO|1|1|A|1637
7PWO|1|1|G|1638
*
7PWO|1|1|U|1673
7PWO|1|1|G|1674
7PWO|1|1|A|1675
7PWO|1|1|U|1676
7PWO|1|1|U|1677
*
7PWO|1|1|A|1804
7PWO|1|1|C|1805
7PWO|1|1|C|1806
7PWO|1|1|A|1807
7PWO|1|1|A|1808
7PWO|1|1|C|1809
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A2
- Ribosomal protein L2
- Chain n1
- Ribosomal protein eL41
- Chain p2
- Ribosomal protein L37a
Coloring options: