J4_7PZY_011
3D structure
- PDB id
- 7PZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the vacant Candida albicans 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.32 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7PZY|1|A|A|1011, 7PZY|1|A|C|1013, 7PZY|1|A|U|1014, 7PZY|1|A|A|1015, 7PZY|1|A|U|1016
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7PZY_011 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0499
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7PZY|1|A|A|620
7PZY|1|A|A|621
7PZY|1|A|G|622
*
7PZY|1|A|C|960
7PZY|1|A|G|961
7PZY|1|A|A|962
7PZY|1|A|A|963
7PZY|1|A|A|964
7PZY|1|A|G|965
*
7PZY|1|A|C|1006
7PZY|1|A|C|1007
7PZY|1|A|A|1008
7PZY|1|A|U|1009
7PZY|1|A|A|1010
7PZY|1|A|A|1011
7PZY|1|A|A|1012
7PZY|1|A|C|1013
7PZY|1|A|U|1014
7PZY|1|A|A|1015
7PZY|1|A|U|1016
7PZY|1|A|G|1017
*
7PZY|1|A|U|1088
7PZY|1|A|U|1089
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AO
- 60S ribosomal protein L41
- Chain M
- Ribosomal 40S subunit protein S11A
- Chain O
- Ribosomal 40S subunit protein S13
- Chain P
- Ribosomal 40S subunit protein S14B
- Chain X
- 40S ribosomal protein S22-A
- Chain Y
- Ribosomal 40S subunit protein S23B
- Chain b
- 40S ribosomal protein S26
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