J4_7Q0F_004
3D structure
- PDB id
- 7Q0F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with phyllanthoside
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GGUUC*GGUUAG*CU*AGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 7Q0F|1|1|U|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7Q0F_004 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0497
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7Q0F|1|1|G|1488
7Q0F|1|1|G|1489
7Q0F|1|1|U|1490
7Q0F|1|1|U|1491
7Q0F|1|1|C|1492
*
7Q0F|1|1|G|1516
7Q0F|1|1|G|1517
7Q0F|1|1|U|1518
7Q0F|1|1|U|1519
7Q0F|1|1|A|1520
7Q0F|1|1|G|1521
*
7Q0F|1|1|C|1610
7Q0F|1|1|U|1611
*
7Q0F|1|1|A|1825
7Q0F|1|1|G|1826
7Q0F|1|1|U|1827
7Q0F|1|1|C|1828
7Q0F|1|1|G|1829
7Q0F|1|1|U|1830
7Q0F|1|1|A|1831
7Q0F|1|1|C|1832
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 8
- Ribosomal 60S subunit protein L25
- Chain AH
- Ribosomal 60S subunit protein L34B
- Chain AK
- Ribosomal protein L37
- Chain AL
- Ribosomal 60S subunit protein L38
- Chain AM
- 60S ribosomal protein L39
- Chain z
- Ribosomal protein L19
Coloring options: