J4_7Q4K_001

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7Q4K|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Q4K_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2872

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7Q4K|1|AA|G|115
7Q4K|1|AA|A|116
7Q4K|1|AA|G|117
7Q4K|1|AA|U|118
7Q4K|1|AA|A|119
7Q4K|1|AA|A|120
7Q4K|1|AA|U|121
7Q4K|1|AA|G|122
*
7Q4K|1|AA|U|239
7Q4K|1|AA|G|240
*
7Q4K|1|AA|C|286
7Q4K|1|AA|U|287
7Q4K|1|AA|A|288
7Q4K|1|AA|G|289
*
7Q4K|1|AA|C|311
7Q4K|1|AA|C|312

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17