J4_7Q4K_002

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7Q4K|1|AA|C|183, 7Q4K|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Q4K_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1512

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7Q4K|1|AA|G|142
7Q4K|1|AA|A|143
7Q4K|1|AA|G|144
*
7Q4K|1|AA|C|178
7Q4K|1|AA|A|179
7Q4K|1|AA|U|180
7Q4K|1|AA|A|181
7Q4K|1|AA|A|182
7Q4K|1|AA|C|183
7Q4K|1|AA|G|184
*
7Q4K|1|AA|C|193
7Q4K|1|AA|C|194
7Q4K|1|AA|A|195
7Q4K|1|AA|A|196
7Q4K|1|AA|A|197
7Q4K|1|AA|G|198
*
7Q4K|1|AA|U|219
7Q4K|1|AA|G|220
7Q4K|1|AA|C|221

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20