J4_7Q4K_007

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

7Q4K|1|BA|G|1271, 7Q4K|1|BA|A|1272, 7Q4K|1|BA|U|1273, 7Q4K|1|BA|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Q4K_007 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0799

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7Q4K|1|BA|C|1270
7Q4K|1|BA|G|1271
7Q4K|1|BA|A|1272
7Q4K|1|BA|U|1273
7Q4K|1|BA|A|1274
7Q4K|1|BA|A|1275
7Q4K|1|BA|A|1276
*
7Q4K|1|BA|U|1294
7Q4K|1|BA|C|1295
*
7Q4K|1|BA|G|1645
7Q4K|1|BA|C|1646
7Q4K|1|BA|U|1647
7Q4K|1|BA|U|1648
*
7Q4K|1|BA|A|2009
7Q4K|1|BA|G|2010

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BN

50S ribosomal protein L17

Chain BS

50S ribosomal protein L22