J4_7QCA_003

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGAUAAU*AGA*UGGAUG*CUAG

Length

20 nucleotides

Bulged bases

7QCA|1|L50|G|1486

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|L50|C|1119
7QCA|1|L50|G|1120
7QCA|1|L50|A|1121
7QCA|1|L50|U|1122
7QCA|1|L50|A|1123
7QCA|1|L50|A|1124
7QCA|1|L50|U|1125
*
7QCA|1|L50|A|1142
7QCA|1|L50|G|1143
7QCA|1|L50|A|1144
*
7QCA|1|L50|U|1484
7QCA|1|L50|G|1485
7QCA|1|L50|G|1486
7QCA|1|L50|A|1487
7QCA|1|L50|U|1488
7QCA|1|L50|G|1489
*
7QCA|1|L50|C|1786
7QCA|1|L50|U|1787
7QCA|1|L50|A|1788
7QCA|1|L50|G|1789

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LDD

60S ribosomal protein L31

Chain LP0

60S ribosomal protein L17

Chain LR0

60S ribosomal protein L19