J4_7QCA_005

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UU*AGUGAG*CC*GUCCGUA

Length

17 nucleotides

Bulged bases

7QCA|1|L50|G|1181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|L50|U|1162
7QCA|1|L50|U|1163
*
7QCA|1|L50|A|1178
7QCA|1|L50|G|1179
7QCA|1|L50|U|1180
7QCA|1|L50|G|1181
7QCA|1|L50|A|1182
7QCA|1|L50|G|1183
*
7QCA|1|L50|C|1244
7QCA|1|L50|C|1245
*
7QCA|1|L50|G|1440
7QCA|1|L50|U|1441
7QCA|1|L50|C|1442
7QCA|1|L50|C|1443
7QCA|1|L50|G|1444
7QCA|1|L50|U|1445
7QCA|1|L50|A|1446

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LGG

Ribosomal protein L34

Chain LHH

Ribosomal L29 protein

Chain LLL

60S ribosomal protein L39

Chain LR0

60S ribosomal protein L19

Chain LX0

60S ribosomal protein L23a