J4_7QCA_007

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GACUG*CAUAG*UGAGU*AAUGAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QCA_007 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.1919

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7QCA|1|L50|G|1582
7QCA|1|L50|A|1583
7QCA|1|L50|C|1584
7QCA|1|L50|U|1585
7QCA|1|L50|G|1586
*
7QCA|1|L50|C|1598
7QCA|1|L50|A|1599
7QCA|1|L50|U|1600
7QCA|1|L50|A|1601
7QCA|1|L50|G|1602
*
7QCA|1|L50|U|1623
7QCA|1|L50|G|1624
7QCA|1|L50|A|1625
7QCA|1|L50|G|1626
7QCA|1|L50|U|1627
*
7QCA|1|L50|A|1753
7QCA|1|L50|A|1754
7QCA|1|L50|U|1755
7QCA|1|L50|G|1756
7QCA|1|L50|A|1757
7QCA|1|L50|C|1758

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8

Chain LPP

60S ribosomal protein L37a

Chain S60

Small subunit ribosomal RNA; SSU rRNA