J4_7QCA_008

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7QCA|1|L50|U|1750

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QCA_008 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1065

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|L50|C|1629
7QCA|1|L50|U|1630
7QCA|1|L50|G|1631
*
7QCA|1|L50|C|1684
7QCA|1|L50|G|1685
*
7QCA|1|L50|C|1703
7QCA|1|L50|U|1704
7QCA|1|L50|U|1705
7QCA|1|L50|A|1706
7QCA|1|L50|A|1707
7QCA|1|L50|G|1708
7QCA|1|L50|G|1709
7QCA|1|L50|U|1710
7QCA|1|L50|A|1711
7QCA|1|L50|G|1712
*
7QCA|1|L50|U|1746
7QCA|1|L50|G|1747
7QCA|1|L50|A|1748
7QCA|1|L50|A|1749
7QCA|1|L50|U|1750
7QCA|1|L50|G|1751

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8

Chain S60

Small subunit ribosomal RNA; SSU rRNA