J4_7QCA_009

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGAAG*CUGAG*UGAG*CGG

Length

17 nucleotides

Bulged bases

7QCA|1|L50|A|2028, 7QCA|1|L50|A|2110, 7QCA|1|L50|G|2121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QCA_009 not in the Motif Atlas

Homologous match to J4_8C3A_008

Geometric discrepancy: 0.3213

The information below is about J4_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|L50|C|2025
7QCA|1|L50|G|2026
7QCA|1|L50|A|2027
7QCA|1|L50|A|2028
7QCA|1|L50|G|2029
*
7QCA|1|L50|C|2083
7QCA|1|L50|U|2084
7QCA|1|L50|G|2085
7QCA|1|L50|A|2086
7QCA|1|L50|G|2087
*
7QCA|1|L50|U|2108
7QCA|1|L50|G|2109
7QCA|1|L50|A|2110
7QCA|1|L50|G|2111
*
7QCA|1|L50|C|2120
7QCA|1|L50|G|2121
7QCA|1|L50|G|2122

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LD0

60S ribosomal protein L5

Chain LOO

60S ribosomal protein L44

Chain LT0

60s ribosomal protein L21