J4_7QCA_011

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUAG*CGUGAAAACAAG*UGAGUAAC*GGAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|S60|C|29
7QCA|1|S60|U|30
7QCA|1|S60|A|31
7QCA|1|S60|G|32
*
7QCA|1|S60|C|377
7QCA|1|S60|G|378
7QCA|1|S60|U|379
7QCA|1|S60|G|380
7QCA|1|S60|A|381
7QCA|1|S60|A|382
7QCA|1|S60|A|383
7QCA|1|S60|A|384
7QCA|1|S60|C|385
7QCA|1|S60|A|386
7QCA|1|S60|A|387
7QCA|1|S60|G|388
*
7QCA|1|S60|U|406
7QCA|1|S60|G|407
7QCA|1|S60|A|408
7QCA|1|S60|G|409
7QCA|1|S60|U|410
7QCA|1|S60|A|411
7QCA|1|S60|A|412
7QCA|1|S60|C|413
*
7QCA|1|S60|G|459
7QCA|1|S60|G|460
7QCA|1|S60|A|461
7QCA|1|S60|G|462

Current chains

Chain S60

RNA SSU

Nearby chains

Chain SEE

eS30 SEE

Chain SJ0

40S ribosomal protein S9

Chain SX0

uS12 SX0